MmuEX0053379 @ mm10
Exon Skipping
Gene
ENSMUSG00000070420 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:MGI Symbol;Acc:MGI:3647079]
Coordinates
chr5:145287308-145291277:+
Coord C1 exon
chr5:145287308-145287399
Coord A exon
chr5:145288294-145288417
Coord C2 exon
chr5:145290330-145291277
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCAATCTCCTGTTGTTTCAGGGT
3' ss Score
8.65
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CATTGCCCATTCTTCATGTGGGTCCAGGGCTTCCCTCTGTGAGTGCCAGAGACCAAGAGATGGCTGCTGGATTCCTTGCAGCCACGTCCCAG
Seq A exon
GGTCTGGGGCCATTTAAAGACATGACTTTGGGTTTTCCTGAGGAGGAATGGAGGCATGTAGCCCCAGCTCAGATTGACTGCTTTGGAGAATACGTGGACTCACAGGATTGTGGGGTCCTTCCAG
Seq C2 exon
GTGCTGGGAGCAAGGAGAAGGAGGCTAAGCCCCAGCAGGAAGACCTGAAGAGAGCATTTGTTGGGTTGACTTCCGATGGCTTTGGAGAAGCCGACATCCAGATTCCTGGACCAGGGGGCACCTGTGAGCAGGAGCCTGGGAGCTCTGGGACCAGTCTGCCTGGGCTTCCTGCTCCTCAGCATGGGGTACCCCTGCCTGACACCCTCAACACCCACAATTCTTTCTGGAAGCCTTTCCAGTGCCCTGAGTGTGGAAAAGGCTTTAGTCGGAGCTCCAACCTTGTTAGGCACCAGCGGACCCATGAAGAAGAAAAATCCTTTGGCTGTGTGGAGTGTGGGAAAGGTTTCACCCTGAGGGAATACCTCACCAAGCATCAGAGGACCCACCTGGGCAAGAGGCCCTATGTGTGTGGCGAGTGCTGGAAGACCTTCAGCCAGAGGCATCACCTGGAGGTGCACCAGCGTAGCCACACTGGGGAGAAGCCCTACAAGTGCTCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070420_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=0.381 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGGCTGCTGGATTCCT
R:
ATTGTGGGTGTTGAGGGTGTC
Band lengths:
255-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types