RnoEX0102299 @ rn6
Exon Skipping
Gene
ENSRNOG00000042213 | Zscan25
Description
zinc finger and SCAN domain containing 25 [Source:RGD Symbol;Acc:1308619]
Coordinates
chr12:11774788-11779060:-
Coord C1 exon
chr12:11778969-11779060
Coord A exon
chr12:11777809-11777932
Coord C2 exon
chr12:11774788-11775968
Length
124 bp
Sequences
Splice sites
3' ss Seq
GCAATCTCCCGTTGTTTCAGGGT
3' ss Score
8.66
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CATTGCCCATTCTTCACGTGGGTTCAGGGCTTCCCACTGTGAGTGCCAGAGACCAAGAGATTGCAGCTGGGTTCCTTGCAGCCACGTCCCAG
Seq A exon
GGTCTGGGGCCATTTAAAGACATGACTTTGGGTTTCCCTGAGGAGGAGTGGAGGCACGTAGCCCCGGCACAGATTGACTGCTTTGGGGAATATGTGGACTCTCAGGACTGTGGCGCCCCTCCAG
Seq C2 exon
GTGCTGGGAGCAAGGAGAAGGAGGCTAAGCCCCAGCAAGAAGACCTGAAGAGAGCATTTGTTGGGTTGACTTCCGATGGGTTTGGAGAAGCTGCCATCCAGGTTCCTGTGCCAGGGGGCACCTGTGAGCAGGAGCCTGGGGGCTCTGGGACCAGTGTGCCTGGGCTTCCTGCTCCTCAGCCTGGCGTCCCCCTGCCTGAGGCCCTCAGCGCCCACAGTTCTTTCTGGAAGCCATTCCAGTGCCCTGAGTGTGGGAAAGGCTTCAGTCGGAGCTCCAACCTTGTCAGGCACCAGCGGACCCACGAGGAAGAGAAAGCCTTTGGCTGTGTGGAGTGCGGGAAAGGTTTCACCTTAAGGGAATACCTCACCAAGCATCAGAGGACCCACCTGGGCAAGAGGCCCTACGTGTGCGGAGAGTGCTGGAAGACCTTCAGTCAGAGGCATCACCTGGAGGTGCACCAGCGCAGCCACACCGGGGAGAAGCCCTACAAGTGTGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042213-'10-8,'10-7,11-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.454 C2=0.344
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.0),PF134651=zf-H2C2_2=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=9.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGCAGCTGGGTTCCTTG
R:
AAAGAACTGTGGGCGCTGAG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]