DmeEX0008767 @ dm6

Exon Skipping

Gene

FBgn0015519 | nAChRalpha3

Description

The gene nicotinic Acetylcholine Receptor alpha3 is referred to in FlyBase by the symbol Dmel AChRalpha3 (CG2302, FBgn0015519). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is X:8276200..8367169. Its molecular function is described by: acetylcholine-gated cation-selective channel activity; neurotransmitter receptor activity; acetylcholine receptor activity. It is involved in the biological process described with 6 unique terms, many of which group under: transport; localization; biological regulation; signaling; system process. 25 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: sleep defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.

Coordinates

chrX:8307006-8365746:-

Coord C1 exon

chrX:8365490-8365746

Coord A exon

chrX:8329349-8330141

Coord C2 exon

chrX:8307006-8307300

Length

793 bp

Sequences

Splice sites

3' ss Seq

AATGTGTCCTTTCCTTCCAGGAC

3' ss Score

12.27

5' ss Seq

CAAGTAAGT

5' ss Score

10.08

Exon sequences

Seq C1 exon

GCTGAAACTTCAAAACAAATATTGGAAAATTCCGAATAAAAAAAGGTGTGCCAGTTAGCCGAAGGAACCGAATGCAGATTGAAAGCTAAAGTTCGAGGAAGCCAACAGGAACCAAAACAAGGAAGCGAGCCCCTGTCCGTGCGAAGGACCTCCTGGGTCTGTGTGCGTGTGTGCGTGTGTGGGTGCGGCGACACCACTACCACTACCGCTATCACTACCACTATAGCAGCATCGGGCGAAATACTTTTTGTGCCAAG

Seq A exon

GACTCGCCCTTTGTCTATCTATACCACTCCCCTTGCACTCTTCGCGGAATAACGTGGAACAAATGAAGGAGGAAGCGCAGGAATGAGGCGATGTGAAGCAAAAGGACAACGAGGACAGCAAGGAACACAACAAAGGCAAAACCGGAAGAAGGCCACCAAATTGAAGAACACACACATTTGAAGAATTTTAATCGAAAACTGCCAAGAAACAAGTATATTTACAAATATATTTATATACCTTGTAAGCCAAAAAAAAAAAACAAAAATAAGAAAAAAACGACCGTACATTAATAGATCTAAAATATATAGATACATATATAGAGAAATATGTTATATTTACTATGAAATCGAGGAGCATGGAAGCGATACCCAGAATAATAATCGATGTAAATAAATGCTGCCAATTCGATTACACTGCGAATTAAGAACTGCAACTGAGATGCATAGAACGCACAACAACAATCCCAGAAATACCAGGAATCCACAATCCATGAAGAGAAAGTTCACTTTTCCCGCGACAGCTGCGCCTGCGCCTTAAAAACTAGACATAAACATATATATATATATATATCGTATCGATCTTGGAACTATTAAATTGAAAGGATTGGAGCCGCCAGAGCCGAGGATTATATATATATATATAGTCATATATATATATATATATATAGAGCGAGAGAGAGAGACGGGGCAGATCCACCACCGCAGCACAGGCAAAAAAAGCGTGCAGAGGGAAATGAGATGAAGTGGTTTCAAGTGACCATAGATATGATTCTTGTGCTTTCATTTATATCAA

Seq C2 exon

GCAGCACAGCGAATCCGGATGCGAAACGATTGTACGACGATTTGCTGAGCAACTACAACAAACTGGTACGACCGGTGGTCAATGTGACGGACGCGCTCACCGTTCGCATCAAGCTGAAGCTATCGCAACTGATCGATGTCAATCTGAAGAACCAGATAATGACCACCAATCTGTGGGTGGAGCAGTCCTGGTACGACTACAAGCTCAAGTGGGAGCCCAAGGAGTATGGCGGCGTCGAGATGCTTCACGTGCCCTCCGATCACATCTGGCGTCCGGACATCGTTCTCTACAACAA

VastDB Features

Vast-tools module Information

Secondary ID

FBgn0015519-'2-4,'2-3,3-4

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available

Features