Special

FBgn0015519 @ dm6

Biotype
protein_coding
Gene Symbol
nAChRalpha3
Description
The gene nicotinic Acetylcholine Receptor alpha3 is referred to in FlyBase by the symbol Dmel AChRalpha3 (CG2302, FBgn0015519). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is X:8276200..8367169. Its molecular function is described by: acetylcholine-gated cation-selective channel activity; neurotransmitter receptor activity; acetylcholine receptor activity. It is involved in the biological process described with 6 unique terms, many of which group under: transport; localization; biological regulation; signaling; system process. 25 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: sleep defective; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of low expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chrX:8276200-8367169:-
Assembly
dm6

GENOMIC BROWSER[edit]

EXPRESSION VALUES[edit]

SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Intron Retention
1057
chrX:8365747-8366803
-
53.65
62.59
0
Intron Retention
35348
chrX:8330142-8365489
-
8.1
100
0
Intron Retention
180
chrX:8306826-8307005
-
8.8
100
0
Intron Retention
4482
chrX:8287768-8292249
-
7.59
36.51
0
Intron Retention
91
chrX:8286227-8286317
-
6.51
31.37
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000101204 CHRNA4 5-to-9
Human hg38 ENSG00000117971 CHRNB4 5-to-9
Human hg38 ENSG00000120903 CHRNA2 5-to-9
Human hg38 ENSG00000138435 CHRNA1 5-to-9
Human hg38 ENSG00000147434 CHRNA6 5-to-9
Human hg19 ENSG00000101204 CHRNA4 5-to-9
Human hg19 ENSG00000117971 CHRNB4 5-to-9
Human hg19 ENSG00000120903 CHRNA2 5-to-9
Human hg19 ENSG00000138435 CHRNA1 5-to-9
Human hg19 ENSG00000147434 CHRNA6 5-to-9
Mouse mm10 ENSMUSG00000022041 Chrna2 5-to-9
Mouse mm10 ENSMUSG00000027950 Chrnb2 5-to-9
Mouse mm10 ENSMUSG00000031492 Chrnb3 5-to-9
Mouse mm10 ENSMUSG00000032303 Chrna3 5-to-9
Mouse mm10 ENSMUSG00000035200 Chrnb4 5-to-9
Mouse mm9 ENSMUSG00000022041 Chrna2 5-to-9
Mouse mm9 ENSMUSG00000027950 Chrnb2 5-to-9
Mouse mm9 ENSMUSG00000031492 Chrnb3 5-to-9
Mouse mm9 ENSMUSG00000032303 Chrna3 5-to-9
Mouse mm9 ENSMUSG00000035200 Chrnb4 5-to-9
Rat rn6 ENSRNOG00000012283 Chrna6 5-to-9
Rat rn6 ENSRNOG00000013829 Chrna3 5-to-9
Rat rn6 ENSRNOG00000017424 Chrna2 5-to-9
Rat rn6 ENSRNOG00000018286 Chrna1 5-to-9
Rat rn6 ENSRNOG00000020778 Chrnb2 5-to-9
Cow bosTau6 ENSBTAG00000002252 CHRNA2 5-to-9
Cow bosTau6 ENSBTAG00000013657 CHRNA5 5-to-9
Cow bosTau6 ENSBTAG00000014050 CHRNB3 5-to-9
Cow bosTau6 ENSBTAG00000014056 CHRNA6 5-to-9
Cow bosTau6 ENSBTAG00000018253 CHRNA1 5-to-9
Chicken galGal4 ENSGALG00000003005 CHRNB4 5-to-9
Chicken galGal4 ENSGALG00000003021 CHRNA5 5-to-9
Chicken galGal4 ENSGALG00000005801 CHRNA4 5-to-9
Chicken galGal4 ENSGALG00000015384 CHRNB3 5-to-9
Chicken galGal4 ENSGALG00000016565 CHRNA2 5-to-9
Chicken galGal3 ENSGALG00000003005 F1NWX4_CHICK 5-to-9
Chicken galGal3 ENSGALG00000003021 F1NIT6_CHICK 5-to-9
Chicken galGal3 ENSGALG00000005801 ACHA4_CHICK 5-to-9
Chicken galGal3 ENSGALG00000015384 F1NA49_CHICK 5-to-9
Chicken galGal3 ENSGALG00000016565 F1N9F1_CHICK 5-to-9
Zebrafish danRer10 ENSDARG00000003420 chrna5 5-to-14
Zebrafish danRer10 ENSDARG00000006602 chrna2a 5-to-14
Zebrafish danRer10 ENSDARG00000038508 chrnb3b 5-to-14
Zebrafish danRer10 ENSDARG00000052764 chrnb3a 5-to-14
Zebrafish danRer10 ENSDARG00000057025 chrna2b 5-to-14
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