BtaEX0009006 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002252 | CHRNA2
Description
cholinergic receptor, nicotinic, alpha 2 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1956]
Coordinates
chr8:75884421-75888879:-
Coord C1 exon
chr8:75888729-75888879
Coord A exon
chr8:75885788-75886022
Coord C2 exon
chr8:75884421-75884572
Length
235 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTTGGGCTCACTCAGGTT
3' ss Score
5.31
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGCTGAGAGCCTGGAAACAGCAGCCTGATTCAGAACTTGCCCAGCACTCCCCAGGAAGACAACCTGCCGGTCAGAGTCAGACCTCTCTCACGCATCGAGGCGAGTCCTGCCCCAGCATCTGTCTGACCAGGAAGAGAAGTCACCCAGCTTG
Seq A exon
GTTCTGAGGTGAGAGGGAACCCCCTCGGAATCCCCCAGGGAGTTCTGCCGTGCTAGCTCCCCAGGCCCTGCTGGGGGAGTGGTCCCAGCTTCAACCCACAGCCAAGCCCAAGCCGGCCTTCCTTCTGATGTCCAGCAGCAGCCAGACCCCTCCTCTGAAGCCATGGGTCCCTCCCGTCTTGTGCTCCCGTTCAAGACAAAGCTCGGGCTCTGGTGGCTTCTTCTGATCCCGGCAG
Seq C2 exon
TATCCTCGAAGAGGGCCCCCCACACCCAAGCTGAGGACCGCCTCTTCAAACACCTCTTTAGGGGCTACAACCGTTGGGCGAGACCGGTGCCCAACACCTCGGACGTGGTGATCGTGCGGTTTGGGCTGTCCATCGCCCAGCTCATCGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002252_MULTIEX1-1/3=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACAGCAGCCTGATTCA
R:
CACATCGATGAGCTGGGCGAT
Band lengths:
292-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development