BtaEX0009007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002252 | CHRNA2
Description
cholinergic receptor, nicotinic, alpha 2 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1956]
Coordinates
chr8:75879382-75888879:-
Coord C1 exon
chr8:75888729-75888879
Coord A exon
chr8:75884421-75884572
Coord C2 exon
chr8:75879382-75879491
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCCTGTCCAACAGTAT
3' ss Score
8.85
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
AGCTGAGAGCCTGGAAACAGCAGCCTGATTCAGAACTTGCCCAGCACTCCCCAGGAAGACAACCTGCCGGTCAGAGTCAGACCTCTCTCACGCATCGAGGCGAGTCCTGCCCCAGCATCTGTCTGACCAGGAAGAGAAGTCACCCAGCTTG
Seq A exon
TATCCTCGAAGAGGGCCCCCCACACCCAAGCTGAGGACCGCCTCTTCAAACACCTCTTTAGGGGCTACAACCGTTGGGCGAGACCGGTGCCCAACACCTCGGACGTGGTGATCGTGCGGTTTGGGCTGTCCATCGCCCAGCTCATCGATGTG
Seq C2 exon
GAGTGGAGCGACTACAAGCTGCGCTGGAACCCGGTCGATTTCGGCAACATCACATCCCTCCGCGTCCCTTCGGAGATGATCTGGATCCCAGACATAGTCCTCTACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002252_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACAGCAGCCTGATTCA
R:
AGAGGACTATGTCTGGGATCCA
Band lengths:
243-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development