GgaEX1015436 @ galGal4
Exon Skipping
Gene
ENSGALG00000016565 | CHRNA2
Description
neuronal acetylcholine receptor subunit alpha-2 precursor [Source:RefSeq peptide;Acc:NP_990146]
Coordinates
chr3:104702633-104704881:-
Coord C1 exon
chr3:104704812-104704881
Coord A exon
chr3:104703515-104703669
Coord C2 exon
chr3:104702633-104702677
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCTGCTCCATGTCTCCACAGCCA
3' ss Score
10.14
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
GAAAGCATGGGGTGGCCATGCCGCAGCATCATACCCCTCCTCGTGTGGTGCTTTGTCACCCTCCAGGCAG
Seq A exon
CCACCCGGGAGCAGAAACAGCCCCATGGCTTTGCTGAGGACCGTCTCTTCAAGCATCTCTTCACTGGCTACAACCGGTGGTCACGGCCGGTGCCCAACACCTCCGATGTGGTCATAGTGAAGTTTGGGCTGTCCATAGCCCAGCTGATCGATGTG
Seq C2 exon
GATGAGAAGAACCAAATGATGACCACAAATGTTTGGCTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016565-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=75.0)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCATGGGGTGGCCATG
R:
TGCTTCAGCCAAACATTTGTGG
Band lengths:
114-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]