RnoEX6052043 @ rn6
Exon Skipping
Gene
ENSRNOG00000017424 | Chrna2
Description
cholinergic receptor nicotinic alpha 2 subunit [Source:RGD Symbol;Acc:621533]
Coordinates
chr15:42808897-42817424:+
Coord C1 exon
chr15:42808897-42809130
Coord A exon
chr15:42816194-42816336
Coord C2 exon
chr15:42817273-42817424
Length
143 bp
Sequences
Splice sites
3' ss Seq
TCCTCTCCTTGCTTATTCAGTTG
3' ss Score
8.81
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ACTGAGCATTCTGTTGAACTCGGATCACCTATCTCCAGGAAGCTAGCCTGAATCCCTCATCCCAACAGTGCCTCCCAAACCTTGCAGGTTCTGTGTCTGGGCAACCATGAGCTGAAGCAACTGAGCTCTGTTCTGCACCTGTCACTGCTTCCGAGGGACCCTCGTCAGCCACCCCAGGTCTCCAGCCGGTTGGTTCTCTGCATCCCTTGAGGGGCCTGTCTTCTTCTATGACAA
Seq A exon
TTGCAGAGAGACAGTGCCTCAAAGAAGCCAGCTCTTGGTAGTCCAAGGGAAACCAGGACCCTCTGAAGCCATGACCCTTTCCCATTCTGCTCTCCAGTTCTGGACACATCTTTATCTCTGGTGTCTCCTTCTGGTGCCAGCAG
Seq C2 exon
TGTTGACCCAGCAAGGCTCACACACCCATGCTGAGGACCGCCTGTTCAAACACCTGTTTGGAGGCTACAATCGCTGGGCACGGCCAGTGCCCAACACTTCTGATGTGGTCATCGTGCGCTTTGGATTATCCATTGCTCAGCTCATAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017424-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGTGCCTCCCAAACCTTG
R:
CCAGCGATTGTAGCCTCCAAA
Band lengths:
248-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]