DreALTA0000026-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5696701-5697100:+
Coord C1 exon
chr11:5696701-5696816
Coord A exon
NA
Coord C2 exon
chr11:5696956-5697100
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GTTGTCTGTCTTTGCTGCAGTTG
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTAAACTATACAGTACCGGCCACTATGGTGGTCTTCATCTTTATCAGCTTCCAGCAAGAATCATATGTATCTGAGAAGAATCTGCCTGCACTGGTGCTTCTACTGTTGCTGTATGG
Seq A exon
NA
Seq C2 exon
TTGGTCTATCACTCCGCTTATGTACCCAGCGTCCTTCATCTTCTCCGTGCCCAGTACTGCCTATGTGGTGCTCACCTCCATCAACCTCTTCATTGGCATCAATGGCAGCGTGGCCACATTTGTCCTGGAGCTCTTTGTTGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221-36-37,36-36-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(10.2=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(12.9=100)
Main Inclusion Isoform:
ENSDART00000113281fB2
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATCTGCCTGCACTGGTG
R:
CACATAGGCAGTACTGGGCAC
Band lengths:
108-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]