RnoALTA0001505-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12746648-12747497:-
Coord C1 exon
chr7:12747382-12747497
Coord A exon
chr7:12746739-12746792
Coord C2 exon
chr7:12746648-12746738
Length
54 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
CTGTCACCCTTTCCTCCCAGCTG
3' ss Score
8.95
Exon sequences
Seq C1 exon
TGTAACTACTTGGTGGCAGTGTGCATAGTGGTGCTCATCTTCCTGGCCTTTCAGCAGAAAGCCTATGTAGCTCCAGAGAACCTGCCTGCTCTCTTACTCTTGTTACTGCTGTATGG
Seq A exon
CTGGTCTATTACGCCACTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAG
Seq C2 exon
CACGGCCTATGTGGTGCTCACCTGCATCAACCTCTTCATCGGCATCAACAGCAGCATGGCCACTTTCGTGCTGGAACTGCTTTCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939-49-55,49-54-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.6=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(14.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTCCAGAGAACCTGCCTG
R:
CTGAAAGCAGTTCCAGCACGA
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]