GgaALTA1002955-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000002453 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr28:2825711-2826054:-
Coord C1 exon
chr28:2825939-2826054
Coord A exon
chr28:2825811-2825855
Coord C2 exon
chr28:2825711-2825810
Length
45 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAAG
5' ss Score
2.56
3' ss Seq
CCCCTTCCTCTGCCCTCCAGGTG
3' ss Score
12.09
Exon sequences
Seq C1 exon
TGCAACTACCTGGTCCCTGCACTGCTGGTTGTCCTCATCTTCCTCTGCTTCCAGCAGAAGTCCTACGTGTCCTCAGCCAACCTGCCTGCCCTGGTGCTGCTGCTGCTGCTCTACGG
Seq A exon
GTGGTCCATCACCCCCCTGATGTACCCGGCCTCCTTCCTCTTCAG
Seq C2 exon
CATCCCCAGCACCGCCTACGTGGCCCTGACGTGCGTCAACCTCTTCATTGGCATCAATGGCAGCGTGGCCACCTTCGTGCTGGAGCTCTTTGTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453-41-43,41-42-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.8=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTGCTGGTTGTCCTCATC
R:
ATGAAGAGGTTGACGCACGTC
Band lengths:
146-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]