HsaALTA1004220-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000064687 | ABCA7
Description
ATP binding cassette subfamily A member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr19:1057314-1058059:+
Coord C1 exon
chr19:1057314-1057429
Coord A exon
chr19:1057915-1057973
Coord C2 exon
chr19:1057974-1058059
Length
59 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
GACTCCTATTGTCCCTTCAGCTG
3' ss Score
8.31
Exon sequences
Seq C1 exon
TGTAACTACTTGGTGCCAGCATGCATCGTGGTGCTCATCTTTCTGGCCTTCCAGCAGAGGGCATATGTGGCCCCTGCCAACCTGCCTGCTCTCCTGCTGTTGCTACTACTGTATGG
Seq A exon
CTGGTCGATCACACCGCTCATGTACCCAGCCTCCTTCTTCTTCTCCGTGCCCAGCACAG
Seq C2 exon
CCTATGTGGTGCTCACCTGCATAAACCTCTTTATTGGCATCAATGGAAGCATGGCCACCTTTGTGCTTGAGCTCTTCTCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000064687-64-75,64-74,64-73,64-72-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(11.9=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=PD(6.1=25.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTCATCTTTCTGGCCTT
R:
GGTGGCCATGCTTCCATTGAT
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains