DreALTA0001924-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64889022-64891096:+
Coord C1 exon
chr5:64889022-64889133
Coord A exon
chr5:64890995-64890998
Coord C2 exon
chr5:64890999-64891096
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTCA
5' ss Score
-0.88
3' ss Seq
TTTTTCCTCTTTTCCTCCAGATA
3' ss Score
12.7
Exon sequences
Seq C1 exon
GTTGTTTCCTAGTCTCAGCATAATCACTGAGCTAACTCATCCGTCTAATATGAGGTTCATGCAGTTCCGTGCCAAAGACTGCTACTCCCTGGCTCTCTCCAAACTCGAAAAG
Seq A exon
ATAG
Seq C2 exon
AGCGAGATAAGGGATCGAATCTGGCGTTCATGTTCCGCCTGCCGTTCGCTGCAGGCAGAGTCTTCAGTATCAGCATGCTGGATACTCTGCTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-26-31,26-30-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGTTCATGCAGTTCCGTG
R:
ATGAACGCCAGATTCGATCCC
Band lengths:
93-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]