RnoALTA0020285-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3355483-3356770:+
Coord C1 exon
chr3:3355483-3355594
Coord A exon
chr3:3356669-3356672
Coord C2 exon
chr3:3356673-3356770
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CGAGGATCCCTTTCTTGCAGCAA
3' ss Score
5.62
Exon sequences
Seq C1 exon
GCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACGCACCCTTCCAACATGCGGTTCATGCAGTTCCGGGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAG
Seq A exon
CAAG
Seq C2 exon
AACGGGAGAATGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGGGTGTTTAGTATCAGCATGTTGGATACGCTGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-31-46,31-45-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCAACATGCGGTTCAT
R:
AACATGAAGGCCAGGTTGGAG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]