MmuALTA1038983-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000058740 | Kcnt1
Description
potassium channel, subfamily T, member 1 [Source:MGI Symbol;Acc:MGI:1924627]
Coordinates
chr2:25908045-25909306:+
Coord C1 exon
chr2:25908045-25908156
Coord A exon
chr2:25909205-25909208
Coord C2 exon
chr2:25909209-25909306
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGAGGACCCCTTCCTTGCAGCAA
3' ss Score
5.91
Exon sequences
Seq C1 exon
GCTTTTCCCCAGTCTCAGCATCACCACGGAGCTCACACACCCTTCCAACATGCGGTTCATGCAGTTCCGTGCCAAGGACAGCTACTCTCTGGCTCTTTCCAAACTTGAAAAG
Seq A exon
CAAG
Seq C2 exon
AACGGGAGAACGGCTCCAACCTGGCCTTCATGTTCCGCCTGCCATTTGCTGCTGGTCGAGTATTTAGTATCAGCATGTTGGATACACTGCTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058740-45-70,45-69,45-68-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGCTACTCTCTGGCTCT
R:
TACTCGACCAGCAGCAAATGG
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types