DreALTA0010980-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24879097-24884715:-
Coord C1 exon
chr3:24884627-24884715
Coord A exon
chr3:24879178-24879207
Coord C2 exon
chr3:24879097-24879177
Length
30 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GCTCTTGGCGAACGGTCTAGTTC
3' ss Score
0.12
Exon sequences
Seq C1 exon
TTGGAGTTTTCTCCTCAAACTCTGTGCTGCTATGGCAAACAGCTGTGTACCATCCCCCGAGATGCTGCGTACTTCAGTTACCAGAACAG
Seq A exon
TTCACCCAAATATGGGCTTCTTGCTGACAG
Seq C2 exon
GTACCACTTCTGTGAGAAGTGTTTCAACGAAATCCAGGGGGAGAATGTGTCCCTGGGGGACGACCCAACCCAGCCACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108-20-26,20-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.357
Domain overlap (PFAM):
C1:
PF060018=DUF902=PD(66.7=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATGGCAAACAGCTGTGT
R:
GGACACATTCTCCCCCTGGAT
Band lengths:
114-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]