DreALTA0014952-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079484 | kcnt1
Description
potassium channel, subfamily T, member 1 [Source:ZFIN;Acc:ZDB-GENE-091231-1]
Coordinates
chr21:4723496-4723792:-
Coord C1 exon
chr21:4723681-4723792
Coord A exon
NA
Coord C2 exon
chr21:4723496-4723597
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AATGTGTGTTCGATCAACAGAAG
3' ss Score
6.57
Exon sequences
Seq C1 exon
GTTGTTTCCGAGTCTCAGTATAATCACAGAACTGACTCACCCGTCCAACATGAGATTCATGCAGTTCAGAGCGAAGGACTGCTACTCGCTCGCCCTGTCCAAACTAGAGAAG
Seq A exon
NA
Seq C2 exon
AAGGAACGTGACAAAGGCTCAAATCTGGCCTTCATGTTTCGCCTTCCCTTTGCTGCTGGCCGAGTCTTCAGTATCAGCATGCTGGACACACTCCTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079484-26-30,26-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGAACTGACTCACCCGT
R:
AGCAAAGGGAAGGCGAAACAT
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]