DreALTA0015115-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34992861-34995882:-
Coord C1 exon
chr17:34995784-34995882
Coord A exon
chr17:34992960-34992962
Coord C2 exon
chr17:34992861-34992959
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
ATTGTTTTTGTGTGTGCCAGTAG
3' ss Score
6.08
Exon sequences
Seq C1 exon
GGGGGCTGGAGTGCGCTCATGTGGGCCGCTTATAAGGGCCGTGTGGAGGTGGCAGGTCTACTGCTGGAGAAGGGAGCAAACCCTAACATCACCGGACAG
Seq A exon
TAG
Seq C2 exon
TACAGTGTTTACCCCATCATATGGGCGGCAGGACGAGGCCATGCAGAGATTGTTCAGCTGCTGCTTCAGCATGAAGCCAAAGTCAACTGCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240-5-5,5-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=93.9)
A:
NA
C2:
PF0002325=Ank=WD(100=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACTGCTGGAGAAGGGAGC
R:
AACAATCTCTGCATGGCCTCG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]