RnoALTA0020493-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44239989-44240835:+
Coord C1 exon
chr6:44239989-44240087
Coord A exon
chr6:44240734-44240736
Coord C2 exon
chr6:44240737-44240835
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
CGCGTACCTGTGTATCCCAGCAG
3' ss Score
3.82
Exon sequences
Seq C1 exon
GGTGGATGGACAGCTCTCATGTGGGCGTGCTACAAAGGCAGGACCGACGTGGTCGAGCTGCTTCTTTCTCATGGTGCCAACCCAAGTGTCACTGGTTTG
Seq A exon
CAG
Seq C2 exon
TATAGTGTCTACCCAATCATCTGGGCAGCGGGCAGAGGCCATGCCGACATAGTGCATCTTCTACTGCAGAATGGTGCGAAAGTCAATTGCTCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176-17-13,17-12,17-11-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=93.9)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCAAGTGTCACTGGTT
R:
ACTTTCGCACCATTCTGCAGT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]