GgaALTA1017501-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000016409 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr3:95495446-95496605:-
Coord C1 exon
chr3:95496507-95496605
Coord A exon
chr3:95495540-95495547
Coord C2 exon
chr3:95495446-95495539
Length
8 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TATGTTCTTTTTCTTCCAAGCAA
3' ss Score
6
Exon sequences
Seq C1 exon
GGAGGATGGACTGCTCTGATGTGGGCTTCTTATAAAGGCCGTACTGAAGTAGCTAAGCTGCTGCTGGAGAAAGGAGCAAATCCAAACATCACTGGCATG
Seq A exon
CAATACAG
Seq C2 exon
CGTTTATCCAATTATTTGGGCAGCAGGACGGGGCCACTCAGATATAGTGCATCTCTTACTGCAGCATGGAGCTAAAGTGAATTGCTCTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409-8-7,8-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=93.9),PF127962=Ank_2=PU(4.3=9.1)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGTACTGAAGTAGCTAAGC
R:
CCGTCCTGCTGCCCAAATAAT
Band lengths:
94-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]