HsaALTA0004577-5/5 @ hg38
Alternative 3'ss
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8812395-8813335:-
Coord C1 exon
chr2:8813237-8813335
Coord A exon
chr2:8812463-8812496
Coord C2 exon
chr2:8812395-8812462
Length
34 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TACCAACCAATCTATCCTAGCAG
3' ss Score
2.88
Exon sequences
Seq C1 exon
GGAGGATGGACAGCTCTTATGTGGGCATGTTACAAAGGCCGTACTGACGTAGTAGAGTTGCTTCTTTCTCATGGTGCCAATCCAAGTGTCACTGGTCTG
Seq A exon
CAGTACAGTGTTTACCCAATCATTTGGGCAGCAG
Seq C2 exon
GGAGAGGCCATGCAGATATAGTTCATCTTTTACTGCAAAATGGTGCTAAAGTCAACTGCTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-21-18,21-17,21-16,21-15,21-14-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=97.0)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGCTCTTATGTGGGCA
R:
ACTATATCTGCATGGCCTCTCC
Band lengths:
115-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains