MmuALTA0009633-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25674603-25675639:+
Coord C1 exon
chr12:25674603-25674701
Coord A exon
chr12:25675538-25675540
Coord C2 exon
chr12:25675541-25675639
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TGCGTGTCTGTGTATCCCAGCAG
3' ss Score
5.73
Exon sequences
Seq C1 exon
GGGGGATGGACAGCTCTCATGTGGGCGTGCTACAAAGGCAGGACGGATGTTGTGGAGTTGCTTCTTTCTCATGGTGCCAACCCAAGTGTCACTGGTTTG
Seq A exon
CAG
Seq C2 exon
TACAGTGTCTACCCAATCATCTGGGCAGCGGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGAAAGTCAATTGCTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-9-5,9-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=96.3)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCCAAGTGTCACTGGTT
R:
TGACTTTCGCACCATTCTGCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: