RnoINT0078775 @ rn6
Intron Retention
Gene
ENSRNOG00000023176 | Kidins220
Description
kinase D-interacting substrate 220 [Source:RGD Symbol;Acc:619949]
Coordinates
chr6:44239989-44240835:+
Coord C1 exon
chr6:44239989-44240087
Coord A exon
chr6:44240088-44240733
Coord C2 exon
chr6:44240734-44240835
Length
646 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
CGCGTACCTGTGTATCCCAGCAG
3' ss Score
3.82
Exon sequences
Seq C1 exon
GGTGGATGGACAGCTCTCATGTGGGCGTGCTACAAAGGCAGGACCGACGTGGTCGAGCTGCTTCTTTCTCATGGTGCCAACCCAAGTGTCACTGGTTTG
Seq A exon
GTAAGCACTAACAAAAAGTGAACTTACAGAATGCAGGCTTTTTATGCTTTACGGTGGATAGAGACTTTTCATATCATACTGAATGTCATATAGAATGCTATTTTAAGACTCAGTGAGAATTTTAAGACAATGAGAATTTTGTACACTGTCTTTTTCTCATCTTCTAATGAGAAAGCAAGTCTTTGAACTCAAATGTTAACCATAATTGTGTAACATTTCAGAAGGAGTGTGAATTTCTTAGTTACCTTATCTGTGCACCCTTACTCTGTGCTTCTTGAAAAGACATTTACCATGAAGTCATACCATTTTTTCTACACATTCTATTTTTCTTACCTTGTATACATTTCTAAATTTTTAAACTTTTATTCTACTTATTAATCTTTCCTATCAGCTAGGTAATCACATTAAATAAGTTAACTCTGCAAAAATAAATGTGTTAATAATATATGCATTATTTAGTCTTCACACATCTTAGTTGTCAGTTATATGAGTATTTGTGTTTTAAAATGGAGAATGGTTTCTAACTTGAATTAGAAACCATCACTCTTTGTGTTACTCCTGCTGATATTTTCCTAGTGAATTTGTGTTGTAAATGTCCATCTAAAGACTGTCTTCTCCCCCGTCCTCGCGTACCTGTGTATCCCAG
Seq C2 exon
CAGTATAGTGTCTACCCAATCATCTGGGCAGCGGGCAGAGGCCATGCCGACATAGTGCATCTTCTACTGCAGAATGGTGCGAAAGTCAATTGCTCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023176:ENSRNOT00000005858:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=93.9)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATGGACAGCTCTCATG
R:
GTCGGAGCAATTGACTTTCGC
Band lengths:
198-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]