DreINT0085782 @ danRer10
Intron Retention
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34992861-34995882:-
Coord C1 exon
chr17:34995784-34995882
Coord A exon
chr17:34992960-34995783
Coord C2 exon
chr17:34992861-34992959
Length
2824 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGC
5' ss Score
4.86
3' ss Seq
GTTTTTGTGTGTGCCAGTAGTAC
3' ss Score
2.84
Exon sequences
Seq C1 exon
GGGGGCTGGAGTGCGCTCATGTGGGCCGCTTATAAGGGCCGTGTGGAGGTGGCAGGTCTACTGCTGGAGAAGGGAGCAAACCCTAACATCACCGGACAG
Seq A exon
GTTTGCAGAGCCTTTACCTGATGCTTTCAAACATGTATTGTATATTAAAGCAAGACACTGCAGGAGCCGGTTGCACCAGCAGTGCGCAAGTTAAAACATAGCCTAGTTGTGACTTAAAGCGACACTACACGCTACTAAAGATTTTTGTGTTGCACCACTGAACTTAGTTTAAACGTAACGTTACGTTTTAACTTAATATTTACGGCAGCATCCCCTCACGTGTAACGGTGGAAAAGAGATGACAGAGAGATTATTTTACATCGAGGAGCTCGAGATGATAATGAATGATCTTTCCTTACTAACAGCCTTATTTTCCTCCCAGATCTCGCATTTTTTCAGTTTGTGAAAGAAGAGTTTAGTTTTTTTTCAAGAAGTGCTTTGTGTTTAATCTATCATCAATTAAAATGAGAATTTCTTCACAACTTGAGTTCTTCTCCCAACTTTTCGTTTCATGTGTAGGATATTTCATGTGATAACTTCACAATGTAGGCATGTGCGTCATTTGTTACAGTGACTGACTGTAATGTAATGCAATATAAAAATGTAATTTGTTGTTTCATTTTCATAGTACAGTTATGTATAACCGTTCTGTCTGGTTCTTAAATCTGATTGGCTGATAGCCGTGATATATTTAAGTAATATCAGCACCCGTAAAGCCTCTTTACCCTTTGTGTATTACACCGACCACATACAGCCAGCAAAAAGCAGACACTAAAGATCTAAAGTTTAAAAGATGCTTGCTCAGCTGTTGAACTGTCAGCTCATGATTTGAATCCGGAAGAAAGTAGTTCCTCATACAAAAGGGTTTTTGAGACTGATTTTGTTTTTATATACTCAATTATTTCGTCAAACTGTTGTATAAACGCAATATCACACTCGTAGCAATGCGATATAGCTGTATTTTGGCACTGGTGGGGGCACTAAGGCATGCCTGCGGCCTTGTGCCAATGCACACCTCCGCCTCCCACCAGTGCAGATATACAGCCATATCACACTGCTACTCGTGTAGCACACTCGTAGCAGTGCGATATGGCTGTATATCGGCACTGGTGGGAGGCACCAGTGCCGTAGGTCGAGAATATCGCAGAATATCGCACAGCTATCAGCCAATCAGATTTGAGAACCAGACAGAACTGTTGTGTATGTGTATATATATATATATATATGGCAATAAAGAAATTTAAATGCTTTTTATTGAATATTACATCATTCAATGTGACTATGCTTGATTTTACGGAGAGCTTATGACCTAATAACTACTATTTGCATTAAGAACAAGTGGTGCAACTGAAGCAAGAACAAATTTAAGTACAAACTAGCTAGTAGTTTCTAAACCCCTAGTATAAACTTTACGTTACAGTTTAAGAAAGAACAGCTGGTGCAACCCTACCCAGGTAAATAGTGTAAAAAATGAAAAACACCTCATTTGCTTGCCCTCATGGGGTTTTAAACCTTTACAAGTTTCTTTCTTATGTTATGTTTGAAGAATGCTGGTGGCTGGGAACCAGAAGGTCAACTTCCATGATAGGAAAAAAAAAAAACATGGAAGTCAATTTTGATGCCAGCCATAAACATTTTTTCAAATTTTCTTAATTTGGGTTTAATAGAAGAAAGAAATGCAAATTGTTTTAATCAAGTAAAATGAAAGTAAATGATGACATTATTGTAATGTGTTTTTGGTAAACTGTCACTTTAACGTTATACTTTGACATATTTTAAAATACTGATTGATTACATTAATTAATAAAGATTGCTTTCTTTTTGTCTTACAAGTTTTCTAAAATACTATGTTTGAATTTGCATATATTATAGGAATATATCTCTATTAACAAAATATATAAGTGAAGTCAGGATTACATTTTGGGTGTCTTGTTTTATCACTACTGTGAAGAGACAAAAAAAAAACATTTTACAGTTTTTTTTTGTAGAATAAAATTTTAGAAATCGTATTTCATCAGGGAATATTATGTATGAACCTATTTCTTTGTAAAATTCTTCAGAGTATGCACAGCTCAGAATAACTGAGTACACCCTATTTTGAAAATGAATATTTGTATCCATTTCTCAGTGAATATAGGCAATGTATTGCGGTGCATTTAAACAAAACAGACTTATTAAACAGATAAATTAATTAAAAATATATATTTTAGTCACCAAACATATTTAGAAATTGAAGGGGAATACATTTAAATTTAAGATTGTAAATATTCAAAACATAAAAATAAAAATAACCTGCAAAATTTTAACAAAATGTTTCAATTTTATTTTGCTTCTCTTGATTTTTCCTCTTTTTTAAAATTTGTATTTAATATTTTTCTCTAACATATACATTTGGGTGTACTAGTTTTTGGACCGTTATTGTAAGTTATTCTGTTAGATAAGCTCCAGATTTGGCTTCAGTACTGACTAATCTAATGTATATGCAAAAATATAATATTGTAGAGCTCCCTATTATAATATAAATTGAAAAGAGAGATTTGTGTGTAGTGTTCTCAAATATGCTGAGCACCGTAGATATAAATAAAACTGTTAAGTTAGAAACAGCCTTTAAAAATATGTAGTATCATTGAAATCTGCTAGCACAAACTGATGAAGTGCAGTAAGTGAGACACTTGAAAGTGTATTTTGGGTGATTTCATTAAGCACTTCATGGTAAGACAAAAAGGCAGAAATCAAGAAAACAACAATAAAAAAACAAATACCGTATACTGTATGGGTTTTTGACTGCAGTGTCTTGCCTTACAAACAATGTCTTTCTTTGAGTTTTCTTCTCTAGGTTTGGATGTTTTCTGTGGTGTGTGATTGTTTTTGTGTGTGCCAGTAG
Seq C2 exon
TACAGTGTTTACCCCATCATATGGGCGGCAGGACGAGGCCATGCAGAGATTGTTCAGCTGCTGCTTCAGCATGAAGCCAAAGTCAACTGCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240:ENSDART00000145664:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.3=93.9)
A:
NA
C2:
PF0002325=Ank=WD(100=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]