MmuINT0086568 @ mm9
Intron Retention
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25674603-25675639:+
Coord C1 exon
chr12:25674603-25674701
Coord A exon
chr12:25674702-25675540
Coord C2 exon
chr12:25675541-25675639
Length
839 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
GTGTCTGTGTATCCCAGCAGTAC
3' ss Score
5.19
Exon sequences
Seq C1 exon
GGGGGATGGACAGCTCTCATGTGGGCGTGCTACAAAGGCAGGACGGATGTTGTGGAGTTGCTTCTTTCTCATGGTGCCAACCCAAGTGTCACTGGTTTG
Seq A exon
GTAAGCACTAACAAAAAGTGAATTCTTAATGTGAATTGTTTTTTGTTTTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCTGTCCTCACTTTGTAGACAAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGCCTGGCAACAGGCTTTTTATGCTTCATAGTGAATAGGAATTTTTTAGATTGTACTGACTGTCATATATAATGCTATATGACCAGTGAGACCCAGTGAGAATTTTAAGACAATAAAAATTTTGTATACTGTCTTTTTCTCATCTTCCAATGAAAAAGCAAGTCTTTGAACTCAAATGTTAGCCATAATTGGGTAACATTTCAGAAGCAGAGTGTGAATTTCTTAGTTACCTTACCTGTGCACCCTCACTCTGTGTTTCTTGAAGACATTTACCAAGAAGCCATACCATTTTCCTACATGACTATTTTTCTGTACATTGTGTACATTCTACATTTTTTACTTTTATTCTACTTACTAATATTTCCTATTAGCTAGATAATCACATTAAATAAGTTAACTCTGCAAAAATATATGTATTATTAAGGCTTAACACATGTTAATTGTCAGTTATATAGTCTGAGTATTTGTGTTTTAAAATGGAGACTGGTCTCTAATTGATTTAAAAACCATTCCCTTGTGTTACTCCTCCTGATATTTACTTAGTAAATTTGTGTTGTAAATGTCCATCTAAAGACTGTCCTCTTCCCCCGTCCTTTTGCGTGTCTGTGTATCCCAGCAG
Seq C2 exon
TACAGTGTCTACCCAATCATCTGGGCAGCGGGCAGAGGCCACGCCGACATAGTGCATCTTCTGCTGCAGAATGGTGCGAAAGTCAATTGCTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-Kidins220:NM_001081378:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(28.3=96.3)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGATGGACAGCTCTCAT
R:
CTTATCAGAGCAATTGACTTTCGCA
Band lengths:
198-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: