BtaINT0081476 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88487543-88488637:+
Coord C1 exon
chr11:88487543-88487641
Coord A exon
chr11:88487642-88488538
Coord C2 exon
chr11:88488539-88488637
Length
897 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
GTCTGACTGTCTCCCAGCAGTAC
3' ss Score
6.29
Exon sequences
Seq C1 exon
GGAGGATGGACGGCTCTTATGTGGGCGTGTTATAAAGGCCGTACTGAAGTGGTCGAGCTGCTGCTTTCTCATGGTGCCAATCCAAGTGTTACTGGTCTG
Seq A exon
GTAAGCATTAACAAAAAGTTCGTCTGTAATAGATGTGGTAAGTTCTTTTAGGAAATACTTAATATTGGTTGTACTTTGGACTTCATATTGGGTAAAATGATATAGACCTTACTAAAAATAATAATTCGGAATGCGATTTCAAAACACAAGGGAATTTTTTTATGAAGCCAAACTTTTTTTTCAATTTTTATCAACAAAAAAGCAACTTAAATGTTAGTTACAGCTATATAACATTTCAAAAGGAGATTTTGAAATCCTTATGTCATCTTTCCTGTGTTCTATGGGTATGCATTCTTAACCTAAGCTCTTTTAATGAAGAGAGACATTTACCAAATACTCATGCCAGTTTTCTGTACATTCTTACTGGTCATAATACATGCATTACTGCTTTGCATGAAGCTTGCTCTGACTGCAGATTAAGTAATCATTTTATTGATGGGGGGACTCCTTTCACAGTGCAAATGTATGTCAAATCATCATGTACACTTCAAATACCTTACAGTTTTATTTGTCAATTATGCCTTAATACAGCTGGGAAAAAATCAGTTTTATTCAGGTTGATAGAAGGATTATAAAGAAAGGTTTCACATTCTTCTTCTTAGTCTTACCTGTTGGCTAGATAATTACATTAAGTGTGTTGAATTTATAAAAATAAATATGTTCATAATATATATTTATTTAAGGTTGAGTACATCTCAGTTCTCAGTTACATATTATGAGATTTATGTGTGTTTTTAATGGTCTGTGACTTGACTTTTAAAAAAAATACTACCTTGTATTGCTCCCTGTGTTATTTACTCTTCTTAGCAACTGTGTGCTATAGATATCAACCTAAAAGACTTTTTCTTTCCCTCCCTCCCTGTCTACCTCCCCGCCCGTCTGACTGTCTCCCAGCAG
Seq C2 exon
TACAGTGTCTACCCAATCATTTGGGCAGCAGGCAGAGGCCATGCTGATATAGTGCAACTTTTACTGCAAAATGGTGCCAAGGTCAACTGCTCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963:ENSBTAT00000061437:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=WD(100=97.0)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATGGACGGCTCTTATG
R:
CTTGTCAGAGCAGTTGACCTTG
Band lengths:
198-1095
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development