HsaINT0087374 @ hg19
Intron Retention
Gene
ENSG00000134313 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:29508]
Coordinates
chr2:8952525-8953465:-
Coord C1 exon
chr2:8953367-8953465
Coord A exon
chr2:8952624-8953366
Coord C2 exon
chr2:8952525-8952623
Length
743 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
CAACCAATCTATCCTAGCAGTAC
3' ss Score
3.55
Exon sequences
Seq C1 exon
GGAGGATGGACAGCTCTTATGTGGGCATGTTACAAAGGCCGTACTGACGTAGTAGAGTTGCTTCTTTCTCATGGTGCCAATCCAAGTGTCACTGGTCTG
Seq A exon
GTAAGCATTAACAAAAAAATTTGTTTGTATTATAAGTGGTAAGTTTTCTTAGGGAATACTTAAGGTTGATTATATTTGGCTTCGTGGTGGGTAGAAATATTCTTTATCTTATTAAACGTAACATAGAATATGATTTCAAAACACAGTAATGATAATTTTTTTCTAAAGCTAAGTATTTCTCAATTGTTGTCAGCAAAAAGGCAGCTCTTAGAGCTTAAATGTTAATTATAACTATATAACATTGCAAAAGGAGATTTTGAGATCTTTAGTCATCTTCCTCTTTTCTGTGTGTGAATCCTTAATCTGAACTTAAAGAAAAGAAACATTTACAAAATAATCATACTGTTTTTCTATACATTCTGTTATATATATTTACATTCCTCTTATTTTGCTTTCTTCTTACTAGTATTGCCTGTTGGCCAGATAACCACATTTTAATGTGTTGAATTTATAAAAATAAATGTGTTCATAATATATGTTTACTTAAGATTTATTATATCTTAGTTGCCAATTATGTATTATGAGTATTTTGTCTATTTTTAAAGTGGAGAATGGTTTGTAATCTGATTTAAAAAAAACATTACTTTGTGTTACTTCCTTTGATGTTTACTTTACTTAGCAAATGTGTGTTGTAAATATCTACCTAAAAGATTTTATTTCTCCTTCCCTCCCTCCCTCCTTCCTTTCTTTCTTTCCTTCCTTCCTACTTATCTACCTACCTACCAACCAATCTATCCTAGCAG
Seq C2 exon
TACAGTGTTTACCCAATCATTTGGGCAGCAGGGAGAGGCCATGCAGATATAGTTCATCTTTTACTGCAAAATGGTGCTAAAGTCAACTGCTCTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313-KIDINS220:NM_020738:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.7=93.9)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATGGACAGCTCTTATGTG
R:
CTTATCAGAGCAGTTGACTTTAGCAC
Band lengths:
198-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)