GgaINT0078637 @ galGal3
Intron Retention
Gene
ENSGALG00000016409 | KIDINS220
Description
NA
Coordinates
chr3:98795831-98796990:-
Coord C1 exon
chr3:98796892-98796990
Coord A exon
chr3:98795933-98796891
Coord C2 exon
chr3:98795831-98795932
Length
959 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TATGTTCTTTTTCTTCCAAGCAA
3' ss Score
6
Exon sequences
Seq C1 exon
GGAGGATGGACTGCTCTGATGTGGGCTTCTTATAAAGGCCGTACTGAAGTAGCTAAGCTGCTGCTGGAGAAAGGAGCAAATCCAAACATCACTGGCATG
Seq A exon
GTAAGTGTTTGCCTTAAGAACCACCTCTTCTCTGTTCCCCAGCAAGATGTTTAAAATCTGGAATCCTATCCTAATCCTACCTTGATTAGCATCTTCGACAGTATAACGTTAATCATTGTACTTTATTAATGGAAGTAATTGTTTTGATTTTTGTATGACAGCTGCTGTTTTTTAATTAAAGTAATTAAATGAGTACTTCTTAGTAAGATTCAAATCAGCAGGAGAGGAGATAATAGAAGAAGTCAGTAGTGTATGTCATCTTGCTTGCATAACAGTTGTCATTTTTCTGCATCTGTGTAAGTTAACGGAGTAACTAATCTGTGCAGGTTAGAAACAATTCATTTTAATTGTTCCCTGAGTTATCGAGTGAACTAGATTATAGAATTACGTGCCATAATTGTGAGACAGAATTATGGAGTTAGGATTTTGAGATTTGTTTCAACTTGTAAGCATTTTTATTAAAAATATCTGTATCTATATACATGCATTTTTGACAGGCTATATCTTGACATTTGTGTGAACAGAGAGGTGACAGCATAAGCAAGCTGGTGGCTGATGCAGTAGCGACCACTAAAGGGAAAGCCAGTAGCCACTTCCCTTTCTGACTGTGTCCCATTCTGATTCTTTGTTGTGTATGGAGCTTCTACATGGCACGATTGATCTGCAGCCTTGATTACTTAAGGATGATGTATAACTGTTCTGATTTTTCTCTTACAAATGTGAATGTGAATTTTTAAGCCTAGTTTAAGGAGTTACAAAATTGCTTCAGAACAGTGGCCTGTTTTTAATCGTCATCTAGACAATGTGCTAGGAAACATTATGTGTTATTAGATTTAATTGTGTATATTCCTTCTCCTGCGTGTTCATCACCTCCTGGAATACTGTGATCAATACTGCGTTTGAAAAATGAAGAACATCATTATTTCCTGTGGTTCATCCTATGTTCTTTTTCTTCCAAG
Seq C2 exon
CAATACAGCGTTTATCCAATTATTTGGGCAGCAGGACGGGGCCACTCAGATATAGTGCATCTCTTACTGCAGCATGGAGCTAAAGTGAATTGCTCTGACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409:ENSGALT00000026464:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(45.6=93.9)
A:
NA
C2:
PF127962=Ank_2=PU(29.0=79.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGATGGACTGCTCTGATG
R:
GTCAGAGCAATTCACTTTAGCTCC
Band lengths:
198-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]