DreALTA0020809-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45205817-45206230:-
Coord C1 exon
chr1:45206136-45206230
Coord A exon
chr1:45205976-45205981
Coord C2 exon
chr1:45205817-45205975
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTG
5' ss Score
0.25
3' ss Seq
TTCTGTTTGTTGTGTTTCAGGAG
3' ss Score
10.78
Exon sequences
Seq C1 exon
GAATGCAGAAGAGTCTGCGTTCAGATTTCGACATGGCGTATGAAAGAGGTCGTATCTCTGTATCTGCAGAGGATGGAGTGCCTGCTTTCACAAAG
Seq A exon
GAGCAG
Seq C2 exon
CGGGAGAGGAAAGTGACCGTGGATGAGGTTCCTTCAGGTGTGTATTTGTATCCTGAGGAGGAATCAGGGATGGACATTTTTAGCTCATTTCAAGGACGACCAAACGCTACAGTGTTCGAGGAGGCCCAGAAGGAGATCCTCAGACTCATGAAGATCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773-16-17,16-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTCAGATTTCGACATGGC
R:
CCTCATCCACGGTCACTTTCC
Band lengths:
107-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]