RnoALTA0030107-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2078072-2078473:+
Coord C1 exon
chr12:2078072-2078181
Coord A exon
NA
Coord C2 exon
chr12:2078318-2078473
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TTACTCAGACCCCCACTCAGGAG
3' ss Score
0.98
Exon sequences
Seq C1 exon
GCTTGCAAGGTGGCCCTCGTTCTGACTTTGACATGGCCTATGAACGTGGCCGGATATCTGTTTCCCTTCAAGAAGAGGCCTCTGGAGGCCCTCAGACAGCATCCCCTAGG
Seq A exon
NA
Seq C2 exon
GAGCTCCGGGAGCAGCCAGCAGGCGCCTGTGAATATAGCTTCTGTGAGGATGAGTCAGCCACAGGTGGATGTCCCTTTGGGCCCTACCAGGGCCGCCAGACAAGCAGCATCTTTGAGGCTGCGAAGAGAGAACTAGCCAAGCTGATGCGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977-17-16,17-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=NA C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGACAGCATCCCCTAGG
R:
CCAAAGGGACATCCACCTGTG
Band lengths:
101-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]