DreEX0000096 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61809559-61830300:+
Coord C1 exon
chr5:61809559-61809737
Coord A exon
chr5:61823383-61823481
Coord C2 exon
chr5:61830115-61830300
Length
99 bp
Sequences
Splice sites
3' ss Seq
TATATTGTTCTGTGTTTCAGGGA
3' ss Score
10.81
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTTTAACTACAACACTGATGGCTACGAGGGAGATCCTGCGGAGGACAGGAAGTCTCAAGATGGCTCAGAAACGATGCCCTTTATCGATGAGTCGCCCACCATGTCTCCTCATCTCTGCGCTCGAGGACAAGATGGAGAGGCCGTTTCTCCTACACCACCAGAAGGGCTGCTGTCTGGG
Seq A exon
GGAGACATTGAGAAAGGTCTGGAGATGAAGAAACTGGTTCTGTCTGGTTTTCTGGCCAGCGAGGAGATCTATATTAACCAACTGGAGGCGTTGCTGCTG
Seq C2 exon
CCCATGAAACCTCTTAAAGCGACAGCTACAACTTCGAAGCCAGTGCTGACAGTGGAACAGATCGACACCATTTTCTTCATGATCCAAGACATCTTTGAGATCCATAAGGAGTTTTATGATGCTCTTTCTCCCCACATTCAGCAGTGGGATGAGAAGGTCACTGTGGGGCATCTCTTCCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-'4-5,'4-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.061 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=60.6)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCAGAAACGATGCCCTTT
R:
CTGTTCCACTGTCAGCACTGG
Band lengths:
177-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]