HsaEX0000745 @ hg19
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:81]
Coordinates
chr17:994905-1028702:-
Coord C1 exon
chr17:1028518-1028702
Coord A exon
chr17:1003877-1003975
Coord C2 exon
chr17:994905-995090
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTGCGTTTGTGCAGGTG
3' ss Score
10.45
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTTCAGCTACGGGACGGACGAGTACGACGGAGAGGGGAATGAGGAGCAGAAGGGGCCCCCGGAGGGCTCAGAGACCATGCCGTACATCGATGAGTCGCCCACCATGTCCCCGCAGCTCAGCGCCCGCAGCCAGGGCGGGGGGGATGGCGTCTCCCCGACTCCACCTGAGGGACTGGCTCCTGGG
Seq A exon
GTGGAAGCAGGGAAAGGCCTGGAGATGAGGAAGCTGGTTCTCTCGGGGTTCTTGGCCAGCGAAGAGATCTACATTAACCAGCTGGAAGCCCTGTTGCTG
Seq C2 exon
CCCATGAAACCCCTGAAGGCCACCGCCACCACCTCCCAGCCCGTGCTCACCATCCAGCAGATCGAGACCATCTTCTACAAGATCCAGGACATCTATGAGATCCACAAGGAGTTCTATGACAACCTGTGCCCCAAGGTGCAACAGTGGGACAGCCAGGTCACCATGGGCCACCTCTTCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842-'5-6,'5-4,8-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.941 A=0.056 C2=0.002
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=PU(1.0=2.8)
A:
PF0062115=RhoGEF=PU(12.2=80.0),PF104224=LRS4=PU(4.9=28.0)
C2:
PF0062115=RhoGEF=FE(61.6=100),PF050648=Nsp1_C=PU(71.8=98.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCATGCCGTACATCGA
R:
GATCTGCTGGATGGTGAGCAC
Band lengths:
178-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)