RnoEX0005584 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64626665-64642292:-
Coord C1 exon
chr10:64642090-64642292
Coord A exon
chr10:64634541-64634639
Coord C2 exon
chr10:64626665-64626850
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGGCTTGCTTTCTTGCAGGTG
3' ss Score
11.63
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGCTGCTGTTGCCGCTGCCGCTGTGTGGACCCTGCTTCCTGTTTGCCCTCTGCGGCTCTGGCTGCCATGGAAGAGGAAGAGGAGGCAATAGGCTTTTTGGACAAGGTTCTGGAGGATGAAGATGTTTTTCTCCTGGAGGAGTGTGAACTGGGAACCCCGACCAGCCCTGGCTCAGGGTCCCCCTTCTTGGTGGCCGTGAAG
Seq A exon
GTGGAGGCAGGGAAGGGCCTGGAGATGAGGAAGCTAGTTCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGTTGGAAGCTCTGTTACTG
Seq C2 exon
CCCATGAAGCCCCTGAAGGCCACAGCCACCACCTCCCAGCCTGTGCTCACCATCCAGCAGATCGAGACCATCTTCTACAAGATCCAGGACATCTACGAGATCCACAAGGAGTTCTACGACAACCTCTGCCCCAAGGTGCAGCAGTGGGACAGCCAGGTCACCATGGGCCATCTTTTCCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'4-6,'4-4,10-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=60.6)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAAGGTTCTGGAGGATGA
R:
GATCTGCTGGATGGTGAGCAC
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]