GgaEX0005849 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6320714-6325872:+
Coord C1 exon
chr19:6320714-6320898
Coord A exon
chr19:6325246-6325350
Coord C2 exon
chr19:6325687-6325872
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGCTGTGTTGCACAGGGC
3' ss Score
7.53
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
ATTTCAACTATGGCGCAGAAGACTACGATGCCGAGGGCAACGAGGAGCCCAAAGCACTGCCGGAAGGCTCGGAAACCATGCCCTACATCGATGAGTCGCCCACCATGTCCCCCCAGCTCAGCGCTCGGGGCCAGGAGAGCGGGGATGGCGTCTCACCCACACCCGCCGATGGGCTCAGCACAGGG
Seq A exon
GGCGAGAGAGATGCTGGCAAAGGGCTGGAGATGCGCAAGCTGGTGCTCTCCGGCTTCCTGGCCAGTGAGGAGATCTACATCAATCAGCTGGAGGCACTCCTGTTG
Seq C2 exon
CCCATGAAGCCGCTGAAGGCCACAGCCACTACATCACAGCCCGTCCTCACCCTGCAGCAGATTGAAACCATTTTCTACAAGATCCAGGACATCTATGAAATCCACAAGGAGTTCTATGACAACCTGTGCCCCAAGGTGCAGCAGTGGGACAGCAACATCACCATGGGCCACCTCTTCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'6-3,'6-2,8-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=0.114 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=57.1)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
ENSGALT00000006958fB4620
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAACCATGCCCTACATCG
R:
TGGGGCACAGGTTGTCATAGA
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]