MmuEX0003330 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76292497-76322574:-
Coord C1 exon
chr11:76322390-76322574
Coord A exon
chr11:76299940-76300038
Coord C2 exon
chr11:76292497-76292682
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGGCTTGCTCTCTTGCAGGTG
3' ss Score
12.07
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTTCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGAGGAGCAGAAGGGGCCCCCCGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCCCAGCTCAGCGCCCGCAGCCAAGGTGGTGGGGACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTGGG
Seq A exon
GTGGAGGCAGGGAAGGGTCTGGAGATGAGGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTGGAAGCTCTGTTACTG
Seq C2 exon
CCCATGAAACCCCTGAAGGCCACAGCCACCACCTCCCAGCCTGTGCTCACCATCCAACAGATTGAGACCATCTTCTACAAGATCCAGGACATCTACGAGATCCACAAGGAGTTCTACGACAACCTCTGCCCCAAGGTGCAGCAGTGGGACAGCCAGGTCACCATGGGCCATCTTTTCCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'2-14,'2-12,5-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.901 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(12.7=80.0),PF104224=LRS4=PU(5.7=32.0)
C2:
PF0062115=RhoGEF=FE(38.9=100),PF104224=LRS4=FE(43.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCATGCCGTACATCGAC
R:
CTGTTGGATGGTGAGCACAGG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: