MmuEX0003330 @ mm10
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76478995-76509072:-
Coord C1 exon
chr11:76508888-76509072
Coord A exon
chr11:76486438-76486536
Coord C2 exon
chr11:76478995-76479180
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTGGCTTGCTCTCTTGCAGGTG
3' ss Score
12.07
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTTCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGAGGAGCAGAAGGGGCCCCCCGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCCCAGCTCAGCGCCCGCAGCCAAGGTGGTGGGGACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTGGG
Seq A exon
GTGGAGGCAGGGAAGGGTCTGGAGATGAGGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTGGAAGCTCTGTTACTG
Seq C2 exon
CCCATGAAACCCCTGAAGGCCACAGCCACCACCTCCCAGCCTGTGCTCACCATCCAACAGATTGAGACCATCTTCTACAAGATCCAGGACATCTACGAGATCCACAAGGAGTTCTACGACAACCTCTGCCCCAAGGTGCAGCAGTGGGACAGCCAGGTCACCATGGGCCATCTTTTCCAGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631_MULTIEX2-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=0.056 C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.6=60.6)
C2:
PF0062115=RhoGEF=FE(32.3=100)
Main Skipping Isoform:
ENSMUST00000072740fB5232
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCATGCCGTACATCGAC
R:
CTGTTGGATGGTGAGCACAGG
Band lengths:
174-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types