GgaEX0005849 @ galGal3
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
NA
Coordinates
chr19:6266571-6269170:+
Coord C1 exon
chr19:6266571-6266999
Coord A exon
chr19:6268544-6268648
Coord C2 exon
chr19:6268985-6269170
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCTTGCTGTGTTGCACAGGGC
3' ss Score
7.53
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
TGCAGGCGGAGCACCTGGGGAAAGCATTGGCCAAGGCAGAGCCAGGCAGCTCCGCCGTCCCCGCTCGGGTGACCTCGCCGTCCCTGCTGCCGTCACGTGCGGGTGGCTGTGCTGCTGCCTGGGGAGAGCCCCGCAGCGGGGCCAACGGCCTGAGCTGGGGCAGGCGGGAGCACCGGGGATCCCATAATGGCTCCTTTCATCCAGAGGCTGTGGCCGGCATCCAGGGCTGAGTCAGGCCCGGCTGGCTCGGCTGCGTAAGTCCTCACGTCTGAAGCCTTGTGGGGTCCCCGCAGCCCCCCTGGTGCCCAGCAGGCCATGGAGGAGGAAGAGGAAGCCATAGGGTACCTGGATAAAGTCCTGGAGGATGAAGATGACTCTGAGCCAGGAACCCCCACCAGCCCCGGGTCTCCATTCTCGGCCAGTGAGAAG
Seq A exon
GGCGAGAGAGATGCTGGCAAAGGGCTGGAGATGCGCAAGCTGGTGCTCTCCGGCTTCCTGGCCAGTGAGGAGATCTACATCAATCAGCTGGAGGCACTCCTGTTG
Seq C2 exon
CCCATGAAGCCGCTGAAGGCCACAGCCACTACATCACAGCCCGTCCTCACCCTGCAGCAGATTGAAACCATTTTCTACAAGATCCAGGACATCTATGAAATCCACAAGGAGTTCTATGACAACCTGTGCCCCAAGGTGCAGCAGTGGGACAGCAACATCACCATGGGCCACCTCTTCCAGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'2-7,'2-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=0.043 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(10.4=57.1)
C2:
PF0062115=RhoGEF=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGGAAGAGGAAGCCAT
R:
TGGGGCACAGGTTGTCATAGA
Band lengths:
245-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]