DreEX0003135 @ danRer10
Exon Skipping
Gene
ENSDARG00000036420 | CR376787.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F9C1]
Coordinates
chr7:20141613-20143220:+
Coord C1 exon
chr7:20141613-20141725
Coord A exon
chr7:20142234-20142338
Coord C2 exon
chr7:20142966-20143220
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAAGCACAATGTGTTTTCAGACA
3' ss Score
3.92
5' ss Seq
ACGGTACAA
5' ss Score
4.76
Exon sequences
Seq C1 exon
TGACTGAGGATGAAATGATGGATTCTGACCTACTACATGATGTGTTCCCTGAGGAGTCAGACTGGGGGTCTCATGGCTCTATGCAAACTGAACCATGTTTGCCATCCACACCA
Seq A exon
ACAAACGATAACCCAGATGACCTGCTTCAGAAGAGAATGGTCGTTTTGAAAAGGGTTTTGCTCAGTGAGGAGATCTACCTGATGGAGCTTGAAACGCTGCTCACG
Seq C2 exon
CCCATGAAAGCTCTGAAGGCATCAGCGGGTACCTCACAACCCGTTTTGTCCACTGAGCAAGTTCAGACAGTGTTTTATCAAGTGCCTGAACTCAGAGATCTGCACCGGCAGTTTTACACAAGCCTTCAAACTAAACTGCATCCTGATAACGTAATGGGTCAGGGGTCACAACAAAGCCTCGGAAGGGATGAGGGCCCGGTGATGCATTACCAAGGGGAGCATCATTTATCCGTGGGAGATGTCTTTCTGAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036420-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.257 C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
PF0062115=RhoGEF=PU(9.5=57.1)
C2:
PF0062115=RhoGEF=FE(40.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGTCTCATGGCTCTATG
R:
CTCATCCCTTCCGAGGCTTTG
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]