DreEX0000145 @ danRer10
Exon Skipping
Gene
ENSDARG00000103108 | ACVR2B (2 of 2)
Description
activin A receptor, type IIB [Source:HGNC Symbol;Acc:HGNC:174]
Coordinates
chr2:52238463-52245199:+
Coord C1 exon
chr2:52238463-52238670
Coord A exon
chr2:52243593-52243702
Coord C2 exon
chr2:52245048-52245199
Length
110 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGAGAGCAGACA
3' ss Score
-1.63
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAGTCAGTCATGCGGAAGTGGCGACTAGAGAGTGTGTCTATTATAACGATAACTGGCGGACGGAGAAAACCAATCAGAGCGGGTTCGAGAGGTGCGAGGGGGAGAAAGATAAGAGGCTTCACTGTTACGCGTCATGGCTGAACTCCACCGGCACCATCCGCCTGGTCAAGAAGGGCTGCTGGCTCGACGACTTCAACTGCTATGACAG
Seq A exon
ACAGGAGTGTGTGGCCACAGAGGAGAGTCCGCAGGTGTTCTTCTGCTGCTGTGAAGGGAACTATTGCAACGAGAAGTTCACACACCTGCCGGAAGCCATCGCCCCTGCAG
Seq C2 exon
TGAAGATCCAGCCTCCACAGCCGGGTCCGTCTCTTTTTGGCATCCTGGTTTATTCTCTTCTTCCTCTGGCCATTCTCTCTTTGGCCCTGGTGCTCGCTTGCTGGACGTACCACCAGCGAAAACCACCATACAGACACGTCGACATCGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103108-'3-7,'3-6,4-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0106418=Activin_recp=PU(65.9=85.7)
A:
PF0106418=Activin_recp=PD(33.0=78.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCAGTCATGCGGAAGTGG
R:
ATGCCAAAAAGAGACGGACCC
Band lengths:
251-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]