DreEX0001423 @ danRer10
Exon Skipping
Gene
ENSDARG00000019707 | C21H9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:HGNC:26933]
Coordinates
chr21:3656822-3669794:+
Coord C1 exon
chr21:3656822-3656924
Coord A exon
chr21:3656999-3657146
Coord C2 exon
chr21:3662811-3669794
Length
148 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTCCGTCAGGCA
3' ss Score
8.07
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
GCGCTGTGTTCTCTGAGTGTCCGTATAAAGAGGGTTATGATCTGACCATCGGGACCTCAGAGAAAGGACAGAACACAGATCATGTGACTCTCCCAGCCTTCAG
Seq A exon
GCACATGCTGGTGGTGTTTGGAGGTCTGCAGGGTTTAGAGGCCAGCGTTGATGCGGATGAGAATCTGACCATCAGTGACCCCAGCGTGCTTTTTGACCTTTACCTCAACACATGTCCAGCACAGGGCAGCCGCACCATCCGCACAGAG
Seq C2 exon
GAGGCGCTATTGATCAGTTTGTCAGGACTCCGACAGAAAATCGCATCTACATTTCCAGACCCACCCACAGGATGACCAACAGAAAGTGCATCTTAATGGACCACAGGAAGTGCATCAACAGGTTGAGCAATCCAGACTAAATCTGCACTGTAAAACTGCTTCCTATTCAATGTACATTTTTTGAATCATTTCATATTGACCTTTTATCGAAATATTAATGTATAAAAGTTGTTTGCAAACATAAAAACCACAAAACTGGAGCCTCTGTTTTGAAATGTATACGTTTATTTTCTTAAGACAGGCATGTAAGGAACATTCATAACGAGAGACGAGCAAAACAATCGGCTCATATCATCATATCACTGCAGTCATGAGTAATCATCATCATAACACACACTGCTTTTATTCAGAACCAATGCATTTTAATACAAACGCAACAGATGATAATACTCAAAGGCAAGTCATTTGTTTCAAGAACAAAACAAATAGAGGTTTCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019707_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.000 C2=0.292
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=PD(33.9=92.9)
A:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=40.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGTTCTCTGAGTGTCC
R:
TTAGTCTGGATTGCTCAACCTGT
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]