RnoEX0085613 @ rn6
Exon Skipping
Gene
ENSRNOG00000025711 | Spout1
Description
SPOUT domain containing methyltransferase 1 [Source:RGD Symbol;Acc:1563514]
Coordinates
chr3:8743882-8745756:-
Coord C1 exon
chr3:8745654-8745756
Coord A exon
chr3:8745389-8745536
Coord C2 exon
chr3:8743882-8744601
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTCTCTGGGTACCAGGCA
3' ss Score
6.31
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGCTGTGTTTGCCGAGGCTCCCTTCCAGGATGGGTATGACCTGACCATTGGGACATCAGAACGTGGCTCCAGCGTGGCCTCTACCCAGCTGCCCAACTTCAG
Seq A exon
GCATGCTCTTGTGGTGTTCGGAGGCCTCCAAGGGCTAGAAGCTGGAGTGGATGCTGACCCGAACCTTGAAGTGGCTGACCCCAGTGTCCTCTTCGACTTTTATGTCAACACATGCCCTAGCCAGGGCAGTCGTACCATCCGCACCGAG
Seq C2 exon
GAGGCCATACTCATCTCACTGGCCGCTCTGCAGCCTGGCCTCACCCAGGGAGGGGCGCGACCCACCTGACAGCCCTCTGGATCCAGGATGAGAGGAAGCAGCAAGACAAGGAGGATCACAGGGAGTAGAGATGGTCAAGACTTCTCTCCAAAAATAACTGCCTTTAATGCGAGCCGTCTCCCAGAGTCTTGAGTGAGTCCTACTCCATCACTTGCTACCAGCAGTGATGGCCTTGAGGTTTCCAGCTCGAGCCAGAATATTGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATGCTCTCGATGGGCACTAGGAAGCGCTCCAAAGGGAGAGTCTCATCCACCGGGGCATTGGGCATCACATAGGAACGCAGCTCGATTTGCCCACTGGCTGCCTCCAGGATCAACACCTTGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTCCCAATAACCTGGTACTTCACATAGGACTTCCCATCAGCCTCGGTCCTGTGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025711-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.000 C2=0.227
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
A:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=43.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCAGAACGTGGCTCCAG
R:
ACTCAAGACTCTGGGAGACGG
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]