GgaEX6015130 @ galGal3
Exon Skipping
Gene
ENSGALG00000004622 | C9orf114
Description
NA
Coordinates
chr17:5907955-5908619:-
Coord C1 exon
chr17:5908517-5908619
Coord A exon
chr17:5908205-5908352
Coord C2 exon
chr17:5907955-5908020
Length
148 bp
Sequences
Splice sites
3' ss Seq
GTCCCTGTGCTCTCCCATAGGCA
3' ss Score
11.34
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GCGCTGTCTTTTCAGAATGTCCGTTTAAGGAAGGCTATGATGTCTCTATTGGGACCTCAGAGCGGGGTAACTCCGTGGACCAGGTCACCCTCCCCTCCTTTAG
Seq A exon
GCACATGCTTGTTGTATTTGGAGGTCTTCAGGGCTTGGAAGCTGGGGTTGATGCAGACCCAAACCTGGAGGTCACCGACCCGAGCGTCTTGTTTGACTTCTACCTGAACACCTGTCCCAGCCAAGGCAGCCGAACCATCCGAACAGAG
Seq C2 exon
GAAGCATTGCTGATCTCTCTGTCGGCACTGAGACCTCACATTGATGAGGCTGTGAAGACTCCCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004622-'10-16,'10-13,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.040 C2=0.136
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
A:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGTCTTTTCAGAATGTCC
R:
TGGGAGTCTTCACAGCCTCAT
Band lengths:
167-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]