HsaEX0011600 @ hg19
Exon Skipping
Gene
ENSG00000198917 | C9orf114
Description
chromosome 9 open reading frame 114 [Source:HGNC Symbol;Acc:26933]
Coordinates
chr9:131581930-131586453:-
Coord C1 exon
chr9:131586351-131586453
Coord A exon
chr9:131586026-131586173
Coord C2 exon
chr9:131581930-131585112
Length
148 bp
Sequences
Splice sites
3' ss Seq
CCCCCTCTTACATGGGCCAGGCA
3' ss Score
3.38
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTGCTGTGTTTGCTGAGGCCCCCTTCCAAGATGGGTATGACCTGACCATCGGGACGTCAGAGCGCGGCTCAGATGTGGCCTCTGCCCAGCTTCCCAACTTCAG
Seq A exon
GCATGCTCTTGTGGTGTTCGGGGGCCTCCAGGGTCTGGAAGCTGGAGCGGATGCTGACCCCAACCTGGAGGTGGCTGAACCCAGTGTCCTCTTTGACCTGTACGTCAATACCTGTCCTGGCCAGGGTAGCCGTACCATCCGCACGGAG
Seq C2 exon
GAAGCCATCCTCATCTCCCTGGCCGCCCTGCAGCCTGGCCTCATCCAGGCGGGTGCCCGGCACACCTGAAAGTTCTAAGGGGCCGAGGACATCAGTGAAGCAGCAGTGAAACCAGGGGCTCTGCAGGTCACTTGGGACGGACGCCACCAGACTTGTCTCCAAAAATCACCACCTTTAATACTCCCCGGCCTGCACACACCCACAGTCTCACTGGGCTCCACCCTCACTTACTGCCCGCCGTGATGGCCTTGAGGCTGCCTGCCCGCGCCAGGATGTTTGGCACAAAGAGCAGCCCCGAAGCCCGCTCAATGCTCTCGATGGGCACCAGGAAGCGCTCCAGTGGGATGGCCTCATCCACAGGTGCGTTGGGCATCACGTAGGTGCGGAGCTCAATTTGCCCACCTGCTGCCTCCAGGATCAGCACCTTGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTGCCGATGACCTGGTACTTTACGTAGGATTTCCCATCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198917_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.036 A=0.020 C2=0.284
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
A:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=43.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCCTTCCAAGATGGGTAT
R:
GAGACAAGTCTGGTGGCGTC
Band lengths:
245-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)