MmuEX0013537 @ mm9
Exon Skipping
Gene
ENSMUSG00000039660 | D2Wsu81e
Description
DNA segment, Chr 2, Wayne State University 81, expressed [Source:MGI Symbol;Acc:MGI:106544]
Coordinates
chr2:30028967-30030809:-
Coord C1 exon
chr2:30030707-30030809
Coord A exon
chr2:30030442-30030589
Coord C2 exon
chr2:30028967-30029705
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCTCTGGGTCCCAGGCA
3' ss Score
7.76
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GCGCTGTGTTTGCTGAGGCTCCCTTCCAGGATGGGTACGACCTGACCATTGGGACATCAGAACGTGGCTCCGACGTGGCCTCTGCCCAGCTGCCCAGCTTCAG
Seq A exon
GCATGCCCTTGTGGTGTTTGGAGGCCTCCAAGGGCTAGAAGCTGCAGTGGATGCTGACCCGAACCTTGAAGTGGCTGACCCCAGTGTCCTCTTCGACTTCTATGTCAACACATGCCTTAGCCAGGGCAGCCGTACCATCCGCACCGAG
Seq C2 exon
GAGGCCATACTCATCTCGCTGGCTGCTCTGCAGCCTGGTCTCACCCAGGTGGGATCGAGGCCCGCCTCCCCGCTTTCTGGACCCAGGATGTAGAGGAAGCAGCAGGACAGGAGGATCATGGGAGTAGAGATGGTCAAGTCTTCTCTCCAAAAATAACTGCCTTTAATGTGAGTCAGCCCATCTCCCCAGGGGCTCCAGTGAGTCCTCCACCATCACTTGCTGCCAGCAGTGATAGCCTTGAGGTTTCCAGCTCGAGCCAGAATATTGGGCACGAAGAGCAATCCCGAGGCCCGCTCGATGCTCTCGATGGGCACCAGGAACCGCTCCAGAGGGATGGTCTCATCCACGGGGGCATTGGGCATCACGTAGGAACGTAGCTCGATCTGCCCACCGGCTGCCTCCAGGATCAGCACCTTGAAGAAGTGTGTGGGCACTGCCACGTGGTTCTTCCCAATAACCTGGTACTTCACATAGGACTTCCCATCAGCCTCGGTCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039660_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.433
Domain overlap (PFAM):
C1:
PF0259812=Methyltrn_RNA_3=FE(11.6=100)
A:
PF0259812=Methyltrn_RNA_3=FE(16.8=100)
C2:
PF0259812=Methyltrn_RNA_3=PD(3.4=32.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGGACATCAGAACGTGGC
R:
GGGAGATGGGCTGACTCACAT
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: