DreEX0001988 @ danRer10
Exon Skipping
Gene
ENSDARG00000102312 | CABZ01063402.1
Description
NA
Coordinates
chr24:40706396-40724114:+
Coord C1 exon
chr24:40706396-40706524
Coord A exon
chr24:40717906-40717997
Coord C2 exon
chr24:40723866-40724114
Length
92 bp
Sequences
Splice sites
3' ss Seq
CCAATTCTGGCTTATTGCAGATA
3' ss Score
7.58
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTACACTTTCACTGGCATTTACACGTTCGAGTCGTTGATAAAGATCCTGGCGCGGGGTTTCTGCATCGGGCCCTTCACATTTCTGAGGGACCCCTGGAACTGGCTGGATTTCAGTGTGATTCTGATGGC
Seq A exon
ATATGTAACTGAGTTTGTGGACCTGGGCAATGTCTCAGCGTTACGGACATTCAGGGTTCTGCGAGCACTGAAAACTATCTCAGTCATCCCAG
Seq C2 exon
GCCTGAAGACCATCGTTGGCGCTCTGATCCAGTCGGTGAAGAAGCTGGCGGACGTGATGATCCTCACTGTTTTCTGCCTCAGCGTGTTCGCTCTGATCGGCCTGCAGCTCTTCATGGGGAACCTGCGGCAGAAATGCGTCCGCAGCGCCTCACAATGTCTCAACACCACCTTGCCGACATACAACAACAGCACTTTCATATGCAATAACAGAAGCTGGGCCTCGCTGGAGGAATTCTTCAATAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102312_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.5=100)
A:
PF0052026=Ion_trans=FE(11.9=100)
C2:
PF0052026=Ion_trans=FE(31.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATAAAGATCCTGGCGCGG
R:
AACACGCTGAGGCAGAAAACA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]