RnoEX0078558 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51600846-51602869:-
Coord C1 exon
chr3:51602741-51602869
Coord A exon
chr3:51601938-51602029
Coord C2 exon
chr3:51600846-51601118
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTGAACTCCCTATTACAGATA
3' ss Score
7.98
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTATACGTTCACTGGGATCTATACCTTTGAGTCACTTATAAAGATCTTGGCAAGAGGGTTTTGCTTAGAAGATTTCACTTTCCTCCGTGACCCATGGAACTGGCTGGATTTCAGTGTCATCGTGATGGC
Seq A exon
ATATGTGACAGAGTTTGTGGACCTGGGCAATGTCTCAGCGCTGAGAACGTTCAGAGTTCTCCGAGCATTGAAAACAATATCAGTCATTCCAG
Seq C2 exon
GTTTAAAGACCATCGTGGGGGCCCTGATCCAGTCCGTGAAGAAGCTGTCCGACGTCATGATCCTCACCGTGTTCTGTCTCAGTGTCTTTGCTCTAATCGGGCTGCAGCTCTTCATGGGCAACCTGAGGAATAAATGCTTGCAGTGGCCCCCGAGCGATTCGGCTTTTGAAACCAACACTACTTCCTACTTCAATGGCACAATGGATTCAAATGGGACATTTGTTAATGTAACAATGAGCACTTTCAACTGGAAGGATTATATCGCAGATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'10-11,'10-10,12-11
Average complexity
C1
Mappability confidence:
100%=80=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.0=100)
A:
PF0052026=Ion_trans=FE(11.6=100)
C2:
PF0052026=Ion_trans=FE(34.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTCCTCCGTGACCCATG
R:
TCCTCAGGTTGCCCATGAAGA
Band lengths:
183-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]