MmuEX6101743 @ mm10
Exon Skipping
Gene
ENSMUSG00000064329 | Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66331239-66334336:-
Coord C1 exon
chr2:66334208-66334336
Coord A exon
chr2:66332207-66332298
Coord C2 exon
chr2:66331239-66331508
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTGTGAACTCCTCATTACAGATA
3' ss Score
7.05
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTACACCTTCACAGGAATATATACTTTTGAATCACTAATAAAAATTATTGCAAGGGGCTTCTGTTTAGAAGATTTTACTTTCCTTCGCGACCCATGGAACTGGCTGGACTTCACTGTCATTACATTCGC
Seq A exon
ATATGTGACGGAGTTTGTGGACCTGGGCAATGTCTCAGCATTGAGAACATTCAGAGTTCTTCGAGCATTGAAAACTATTTCAGTCATTCCAG
Seq C2 exon
GCCTGAAGACCATCGTGGGGGCCCTGATCCAGTCGGTGAAGAAGCTGTCTGACGTCATGATACTCACTGTGTTCTGTCTCAGTGTGTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAACCTGAGGAATAAATGTGTACAGTGGCCTCCCACCAACGCTTCCCTTGAGGAACATAGCATAGAGAAGAATATAACTATGGATTACAATGGCACACTTGTAAATGAAACCGTGTTCGAGTTTGACTGGAAATCATACATTCAAGACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064329-'12-17,'12-16,13-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(16.1=100)
A:
PF0052026=Ion_trans=FE(11.6=100)
C2:
PF0052026=Ion_trans=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGGAACTGGCTGGACTTC
R:
TCCTCAGGTTGCCCATGAAGA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types