DreEX0002809 @ danRer10
Exon Skipping
Gene
ENSDARG00000104358 | CLASP1 (2 of 2)
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr11:43731455-43774647:-
Coord C1 exon
chr11:43774504-43774647
Coord A exon
chr11:43733106-43733165
Coord C2 exon
chr11:43731455-43731558
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTCTCTTCCCAGCAT
3' ss Score
9.05
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
CGGGCAGTCGCTCCAGTTCTCCACGAAAGCTCTTGTCGTATGGAAGAGTGTCTGTGGTTCCTGCAACACACACTCACAGACTCAGTAAAATCCCTCGCAGTCAAGGCTGCAGTCGAGAGACCAGCCCCAGCAGAGCAGCACAGG
Seq A exon
CATCACACAGACACTGTCGCTCCACGGGTGCACTGACGGGCACTGATGGTCTGCAGACAG
Seq C2 exon
ATCGGTTCGGGCTCCTCCATCAGGCTCGTATCTCTGCGTCGGTGAACGCCATGCGGATCCTGAACACCGGCACAGAGGTGGAGGCGGCGGTTGCAGACGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104358_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000171910fB265
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGTTCCTGCAACACAC
R:
ACGCAGAGATACGAGCCTGAT
Band lengths:
133-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]