DreEX0002927 @ danRer10
Exon Skipping
Gene
ENSDARG00000089858 | COBLL1 (1 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr6:10107022-10116636:+
Coord C1 exon
chr6:10107022-10107247
Coord A exon
chr6:10116384-10116428
Coord C2 exon
chr6:10116530-10116636
Length
45 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTATTATTCCTTGAGTGG
3' ss Score
-10.64
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCAACAGTTCGTCTTCTGATAAACTACAAGAAGTCCCATAAGGCAGTAGCTCGGGTCAATCCTGCAGTGCCGCTGGCTGAGCTGATGCCCGCCGTGTGTGAGAAGTGTGAGTTTCACCCAGACGCCACCGTCTTACTGAGGACAGATCAGTCTGAGGAGCCTCTGGATCTCACCAAATCACTCAATGACTATGGAATCAGAGAGCTGTACGCCAAACAAACAAAAG
Seq A exon
TGGTTTCAGCAGATCCTCCTTCTGATCCTGTATCAACTAATAAAG
Seq C2 exon
GTGCCGATGAAGAGCAGAAAACCCCTGTTAAAGAAAAGAACCACAGAGAGAAGGCAAACAAAGGATTCTTTGGCTTATTCATAAAGAGCAAGAAAACATCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089858-'7-11,'7-8,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(47.9=60.5)
A:
PF094695=Cobl=FE(15.6=100)
C2:
PF094695=Cobl=PD(35.4=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCTGAGGAGCCTCTGGAT
R:
TGTTTGCCTTCTCTCTGTGGT
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]