GgaEX1016187 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19592357-19594951:+
Coord C1 exon
chr7:19592357-19592585
Coord A exon
chr7:19593945-19593983
Coord C2 exon
chr7:19594854-19594951
Length
39 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTGTCTGTATTATAGCCA
3' ss Score
8.23
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
Seq A exon
CCACGTCACCGGTTGACTTAAACTTGCCATCTTTGAAAG
Seq C2 exon
ATTCCTGTCGTGTGTCTGAAAACTCAGATGTTCTAAAAGAGAAAGAAAACAAAGGGTTTTTCAGCTTTTTTCAACGAAGCAAGAAAAAGAGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'16-14,'16-13,17-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.429 C2=0.273
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(51.1=61.0)
A:
PF094695=Cobl=FE(14.1=100)
C2:
PF094695=Cobl=PD(33.7=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACCAGTCTCAAGAAGCCCT
R:
TGAGTTTTCAGACACACGACAGG
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]